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ref Template  Laboratory Isolate Organizer

Id 2.16.756.5.30.1.1.10.4.17
ref
ch-palm-
Effective Date 2017‑06‑21
Status pending Under pre-publication review Version Label 2017
Name chpalm_entry_LaboratoryIsolateOrganizer Display Name Laboratory Isolate Organizer
Description The Laboratory Isolate Organizer MUST ONLY be used if it is a microbiological specimen with which isolates/germs were examined.
Context Parent nodes of template element with id 2.16.756.5.30.1.1.10.4.17
Label IHE PalM TF3 Rev.8, 6.3.4.11
Classification CDA Entry Level Template
Open/Closed Open (other than defined elements are allowed)
Used by / Uses
Used by 0 transactions and 5 templates, Uses 13 templates
Used by as Name Version
2.16.756.5.30.1.1.10.4.4 Containment draft Laboratory Report Data Processing Entry (2017) 2018‑07‑14 12:26:38
2.16.756.5.30.1.1.10.3.3 link pending Laboratory Speciality Section - coded (2017) 2017‑06‑21
2.16.756.5.30.1.1.10.1.10 link pending General Laboratory Report (2018) 2018‑04‑19
2.16.756.5.30.1.1.10.3.5 link pending Laboratory Report Item Section - coded (2017) 2017‑06‑21
2.16.756.5.30.1.1.10.4.4 Containment pending Laboratory Report Data Processing Entry (2017) 2017‑06‑21
Uses as Name Version
2.16.756.5.30.1.1.10.9.14 Include active Narrative Text Reference (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.5 Containment pending Non-Human Subject - subject Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.6 Containment pending Human Patient with Non-Human Subject - subject Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.7 Containment pending Laboratory Performer - performer Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.9.16 Containment active Author Compilation with name, addr and telecom (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.8 Containment pending Laboratory Results Validator - authenticator/participant Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.9 Containment pending Responsible Party - participant Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.10 Containment pending Device - participant Containment (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.11 Containment pending Specimen Collection (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.3 Containment pending Laboratory Observation (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.18 Containment pending Multimedia Embedded Content (2017) DYNAMIC
2.16.756.5.30.1.1.10.4.2 Containment pending Annotation Comments (2016) DYNAMIC
2.16.756.5.30.1.1.10.4.29 Containment pending External document (2017) DYNAMIC
Relationship Specialization: template 2.16.840.1.113883.10.12.303 (2005‑09‑07)
Specialization: template 1.3.6.1.4.1.19376.1.3.1.5 (2008‑08‑08)
Example
XD-LAB Example
<organizer classCode="CLUSTER" moodCode="EVN">
  <templateId root="2.16.756.5.30.1.1.10.4.17"/>  <templateId root="1.3.6.1.4.1.19376.1.3.1.5"/>  <statusCode code="completed"/>  <effectiveTime value="20071108000000.0000-0500"/>  <specimen typeCode="SPC">
    <specimenRole classCode="ISLT">
      <id root="1.3.6.1.4.1.19376.1.3.4" extension="55584739"/>      <specimenPlayingEntity classCode="MIC">
        <code code="79153007" codeSystem="2.16.840.1.113883.6.96" codeSystemName="SNOMED CT" displayName="Salmonella tennessee 6,7,14;z29;1,2,7"/>      </specimenPlayingEntity>
    </specimenRole>
  </specimen>
  <performer typeCode="PRF">
    <templateId root="1.3.6.1.4.1.19376.1.3.3.1.7"/>    <!-- .. -->
  </performer>
  <author typeCode="AUT"> ... </author>  <participant typeCode="AUTHEN">
    <templateId root="1.3.6.1.4.1.19376.1.3.3.1.5"/>    <!-- .. -->
  </participant>
  <participant typeCode="RESP">
    <!-- .. -->
  </participant>
  <participant typeCode="DEV">
    <!-- .. -->
  </participant>
  <component>
    <observation classCode="OBS" moodCode="EVN">
      <templateId root="1.3.6.1.4.1.19376.1.3.1.6"/>      <code code="89029-0" codeSystem="2.16.840.1.113883.6.1" codeSystemName="LOINC" displayName="Microbiology Culture"/>      <!-- .. -->
    </observation>
  </component>
</organizer>
Item DT Card Conf Description Label
hl7:organizer
IHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs 1 … 1 F CLUSTER
@moodCode
cs 1 … 1 F EVN
hl7:templateId
II 1 … 1 M IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid 1 … 1 F 2.16.756.5.30.1.1.10.4.17
hl7:templateId
II 1 … 1 M IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid 1 … 1 F 1.3.6.1.4.1.19376.1.3.1.5
hl7:id
II 0 … 1 R An ID for this item MAY be filled for traceability. IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid 1 … 1 R MUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
@extension
st 0 … 1   Contains the ID itself. The ID MUST be unique within the system that issued the ID.
hl7:code
CE 0 … 1

If the results in this isolate group are associated to a codable group, then the code SHOULD be specified. The code system is not further specified. LOINC (2.16.840.1.113883.6.1) or SNOMED CT (2.16.840.1.113883.6.96) codes or values from the HL7 vocabulary ObservationType (2.16.840.1.113883.1.11.16226) SHOULD be used.

IF this isolate group contains any other results, then the code SHOULD be omitted.

IHE PalM TF3 Rev.8, 6.3.4.11
@code
cs 1 … 1 R The code MUST be specified.
@codeSystem
oid 1 … 1 R The OID of the code system MUST be specified.
@codeSystemName
st 1 … 1 R The name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st 1 … 1 R The displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
Included 1 … 1 from 2.16.756.5.30.1.1.10.9.14 Narrative Text Reference (DYNAMIC)
The human-readable text MUST be generated automatically from the structured information of this element. The text element MUST contain the reference to the corresponding text in the human readable part, ONLY.
hl7:text
ED 1 … 1 M CDA‑CH V2
hl7:reference
TEL 1 … 1 M The reference to the corresponding text in the human readable part must be specified by reference to content[@ID]: reference[@value='#xxx'] CDA‑CH V2
@value
1 … 1 R Reference to the narrative part of the section in the format '#xxx', where xxx is the ID of the corresponding element.
  Schematron assert role red error  
  test starts-with(@value,'#')  
  Message The @value attribute content MUST conform to the format '#xxx', where xxx is the ID of the corresponding <content/> element.  
  Variable let Name idvalue  
  Value substring-after(@value,'#')  
  Schematron assert role red error  
  test ancestor::hl7:structuredBody//*[@ID=$idvalue]  
  Message No narrative text found for this reference (no content element within this document has an ID that corresponds to '<value-of select="$idvalue"/>').  
hl7:statusCode
CS 1 … 1 M

The status 'completed' means that all expected results for this isolate are present and in a final state.

The status 'active' means that the examinations are still running. Some results are still pending.

The status 'aborted' means that the examinations had to be aborted. Some results MAY be available.

IHE PalM TF3 Rev.8, 6.3.4.11
  CONF
The value of @code shall be drawn from value set 2.16.840.1.113883.1.11.20309 ActStatusAbortedCancelledCompleted (DYNAMIC)
hl7:effectiveTime
IVL_TS.CH.TZ 1 … 1 R Timestamp or period of findings (physiologically relevant period) for all results in this result group. IHE PalM TF3 Rev.8, 6.3.4.11
@value
TS.CH.TZ 0 … 1   Timestamp. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used.
hl7:low
TS.CH.TZ 0 … 1 Start of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used. IHE PalM TF3 Rev.8, 6.3.4.11
  Schematron assert role red error  
  test string-length(@value)>11  
  Message A precision of date and time of day with at least hour and minute is required.  
hl7:high
TS.CH.TZ 0 … 1 End of the period. Accuracy of the value: Date and time with hour and minute. If it is not known, nullFavor='UNK' must be used. IHE PalM TF3 Rev.8, 6.3.4.11
  Schematron assert role red error  
  test string-length(@value)>11  
  Message A precision of date and time of day with at least hour and minute is required.  
  Schematron assert role red error  
  test @nullFlavor='UNK' or @value or (hl7:low and hl7:high)  
  Message Either the imestamp or the period of the findings MUST be declared. If it is not known, nullFavor='UNK' must be used.  
Choice 0 … 1
IF this isolate group is based on a specimen of a non-human material, the subject element MUST be declared.
Elements to choose from:
hl7:subject
0 … 1 Contains 2.16.756.5.30.1.1.10.4.5 Non-Human Subject - subject Containment (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.5'] and hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.3.1.2.1']]
hl7:subject
0 … 1 Contains 2.16.756.5.30.1.1.10.4.6 Human Patient with Non-Human Subject - subject Containment (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.3.1.3.1']]
hl7:specimen
1 … 1 R The specific sub-specimen on which a microorganism was isolated and cultivated. IHE PalM TF3 Rev.8, 6.3.4.11
@typeCode
cs 1 … 1 F SPC
hl7:specimenRole
1 … 1 R IHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs 1 … 1 F SPEC
hl7:id
II 0 … 1 Unique identifier for this isolate, known to the laboratory. IHE PalM TF3 Rev.8, 6.3.4.11
@root
uid 1 … 1 R MUST contain the OID of the system that issued the ID. OIDs of code systems, which are published in the public OID registry for the Swiss health care system (oid.refdata.ch) are REQUIRED. Others are NOT ALLOWED.
@extension
st 0 … 1   Contains the ID itself. The ID MUST be unique within the system that issued the ID.
hl7:specimenPlayingEntity
1 … 1 R IHE PalM TF3 Rev.8, 6.3.4.11
@classCode
cs 1 … 1 F MIC
hl7:code
CE 1 … 1 R Identification of the microorganism, in a standard vocabulary. IHE PalM TF3 Rev.8, 6.3.4.11
@code
cs 1 … 1 R The code MUST be specified.
@codeSystem
oid 1 … 1 R The OID of the code system MUST be specified.
@codeSystemName
st 1 … 1 R The name of the code system MUST be specified for tracking purposes. However, processing is NOT ALLOWED.
@displayName
st 1 … 1 R The displayName of the code MUST be specified for tracking purposes. However, processing is NOT ALLOWED. Instead, a processing system is to display a user readable language translation of the code from the value set.
hl7:performer
0 … * This CAN be used to indicate who has performed the test. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.7 Laboratory Performer - performer Containment (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank where [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.7'] and hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.3.1.7']]
hl7:author
0 … * This CAN be used to indicate who has documented the result. This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.9.16 Author Compilation with name, addr and telecom (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank where [hl7:functionCode [concat(@code, @codeSystem) = doc('include/voc-2.16.756.5.30.1.127.3.10.1.1.3-DYNAMIC.xml')//valueSet [1]/conceptList/concept/concat(@code, @codeSystem) or @nullFlavor]]
Choice 0 … *
This CAN be used to identify other parties:
  • Who has verified the result (AUTHEN).
  • Which external laboratory has delivered the result (RESP).
  • Which device (analyzer) was used to determine the result (DEV).
Elements to choose from:
hl7:participant
0 … * Who has verified the result (AUTHEN). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.8 Laboratory Results Validator - authenticator/participant Containment (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.8'] and hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.3.1.5']]
hl7:participant
0 … * Which external laboratory has delivered the result (RESP). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.9 Responsible Party - participant Containment (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [@typeCode = 'RESP'] [hl7:participantRole]
hl7:participant
0 … * Which device (analyzer) was used to determine the result (DEV). This information supersedes any information recorded at higher level.
Contains 2.16.756.5.30.1.1.10.4.10 Device - participant Containment (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [@typeCode = 'DEV'] [hl7:participantRole]
Choice 1 … * Elements to choose from:
hl7:component
0 … * Contains 2.16.756.5.30.1.1.10.4.11 Specimen Collection (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:procedure [hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.1.2'] and hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.11']]]
@typeCode
cs 1 … 1 F COMP
hl7:component
0 … * Contains 2.16.756.5.30.1.1.10.4.3 Laboratory Observation (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:observation [hl7:templateId [@root = '1.3.6.1.4.1.19376.1.3.1.6'] and hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.3']]]
@typeCode
cs 1 … 1 F COMP
hl7:component
0 … * Contains 2.16.756.5.30.1.1.10.4.18 Multimedia Embedded Content (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:observationMedia [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.18'] and hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.83']]]
@typeCode
cs 1 … 1 F COMP
hl7:component
0 … * Contains 2.16.756.5.30.1.1.10.4.2 Annotation Comments (DYNAMIC) IHE PalM TF3 Rev.8, 6.3.4.11
treeblank treeblank where [hl7:act [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.2'] and hl7:templateId [@root = '2.16.840.1.113883.10.20.1.40'] and hl7:templateId [@root = '1.3.6.1.4.1.19376.1.5.3.1.4.2']]]
@typeCode
cs 1 … 1 F COMP
hl7:reference
0 … * This CAN be used to make reference to an external document.
Contains 2.16.756.5.30.1.1.10.4.29 External document (DYNAMIC)
IHE PalM TF3 Rev.8, 6.3.4.11
treeblank where [hl7:externalDocument [hl7:templateId [@root = '2.16.756.5.30.1.1.10.4.29']]]
@typeCode
cs 1 … 1 F REFR